feat: Complete project reorganization

- Reorganize core-theory into 6 thematic subdirectories (01-06)
- Clean up root directory, move files to appropriate locations
- Create comprehensive README files for navigation
- Add new academic papers and research content
- Implement English naming convention for better indexing
- Total: 42 core theory files organized, 7 READMEs created

Key improvements:
- Clear hierarchical structure (foundational → matrix → analysis → empires)
- Better discoverability with detailed navigation guides
- Scalable framework for future content expansion
- AI-friendly organization for indexing and processing

core-theory/02-matrix-theory/README.md

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+# 02 - Matrix Theory (母体理论)
+
+This directory contains the "K=Y=J=Yade" Matrix Theory - the civilizational source code that connects East and West.
+
+## Core Documents
+
+### 1. Matrix Theory Core
+- **File**: `matrix_theory_core.md`
+- **Content**: The complete "K=Y=J=Yade" framework
+- **Key Insight**: Sound precedes form in civilizational transmission
+
+### 2. Mercury Carrier Theory
+- **File**: `mercury_carrier_theory.md`
+- **Content**: Mercury/alchemy as the true carrier of spiritual knowledge
+- **Key Insight**: The link between Eastern Taoist alchemy and Western Hermeticism
+
+### 3. Kushan Switch Theory
+- **File**: `kushan_switch_theory.md`
+- **Content**: The Kushan Empire as civilization's "router"
+- **Key Insight**: 1st-3rd century knowledge exchange between East and West
+
+### 4. Historical Verification System
+- **File**: `historical_verification_system.md`
+- **Content**: Dual historical verification of the spiritual vector
+- **Evidence**: Hulegu's Western expedition (K→J) and Hitler's Aryan quest (J→K)
+
+### 5. Jade Virtue Physics
+- **File**: `jade_virtue_physics.md`
+- **Content**: Internal rules of the "Jade Virtue" spiritual core
+- **Key Insights**: 
+  - Color hierarchy (Yellow for Emperor, White for Priest)
+  - "Point-to-stop" behavior pattern
+  - Imperial Seal as ultimate physical proof
+
+### 6. K-Y-J Integration Framework
+- **File**: `K_Y_J_YADE_INTEGRATION_FRAMEWORK.md`
+- **Content**: Comprehensive integration of all Matrix Theory components
+
+## The Matrix Formula
+
+**K = Y = J = Yade (玉德)**
+
+Where:
+- **K**: Kunlun, Kushan, Khazar, Khitan
+- **Y**: Yellow, Jade (玉), Yu (禹), Yanda (嚈哒)
+- **J**: Jerusalem, Jewish, Jesus
+- **Yade**: Jade Virtue - the underlying spiritual source code
+
+## Theoretical Breakthrough
+
+This theory reveals that:
+1. **Sound > Form**: Phonetic patterns carry civilizational DNA
+2. **Mercury = Knowledge**: Alchemy is the transmission medium
+3. **Kushan = Switch**: The historical router for East-West exchange
+4. **Jade Virtue = Code**: The internal operating system
+
+## Critical Evidence
+
+- **Hephthalites (嚈哒)**: The parasitic Y-sound regime linking East and West
+- **Imperial Seal**: Yellow jade as physical manifestation of legitimacy
+- **Historical Paths**: Geometric overlap of K→J and J→K spiritual quests
+