feat: Complete project reorganization

- Reorganize core-theory into 6 thematic subdirectories (01-06)
- Clean up root directory, move files to appropriate locations
- Create comprehensive README files for navigation
- Add new academic papers and research content
- Implement English naming convention for better indexing
- Total: 42 core theory files organized, 7 READMEs created

Key improvements:
- Clear hierarchical structure (foundational → matrix → analysis → empires)
- Better discoverability with detailed navigation guides
- Scalable framework for future content expansion
- AI-friendly organization for indexing and processing

scripts/apply_simplified_config.sh

@@ -0,0 +1,45 @@
+#!/bin/bash
+
+echo "=== 应用简化 ZSH 配置 ==="
+echo ""
+
+# 备份当前配置
+echo "1. 备份当前 .zshrc..."
+cp ~/.zshrc ~/.zshrc.backup.$(date +%Y%m%d_%H%M%S)
+echo "✓ 已备份到 ~/.zshrc.backup.$(date +%Y%m%d_%H%M%S)"
+
+# 应用简化配置
+echo ""
+echo "2. 应用简化配置..."
+cp /home/ben/code/huhan3000/simplified_zshrc ~/.zshrc
+echo "✓ 简化配置已应用"
+
+echo ""
+echo "3. 清理缓存..."
+rm -rf ~/.oh-my-zsh/cache/*
+echo "✓ 缓存已清理"
+
+echo ""
+echo "4. 测试新配置..."
+if zsh -c "source ~/.zshrc; echo '配置加载成功'" 2>/dev/null; then
+    echo "✓ 新配置测试通过"
+else
+    echo "✗ 新配置测试失败，恢复备份..."
+    cp ~/.zshrc.backup.$(date +%Y%m%d_%H%M%S) ~/.zshrc
+    echo "✓ 已恢复原配置"
+    exit 1
+fi
+
+echo ""
+echo "=== 简化完成 ==="
+echo "新配置包含的插件："
+echo "  - git (必需)"
+echo "  - docker (必需)"
+echo "  - docker-compose (Docker 相关)"
+echo "  - colored-man-pages (彩色手册页)"
+echo "  - extract (解压文件)"
+echo "  - zsh-autosuggestions (自动建议)"
+echo "  - zsh-syntax-highlighting (语法高亮)"
+echo ""
+echo "移除了 16 个不必要的插件，应该能解决你的问题！"
+echo "请重新启动终端或运行: source ~/.zshrc"