重构程序文件目录结构并更新相关路径引用

- 创建新的目录结构：research/、tools/（含子目录）和apps/
- 移动核心理论文件到research/core-theory/
- 移动天山理论文件到research/specialized/
- 重组tools/目录为多个子目录：content-generation/、data-processing/等
- 更新所有文档中的路径引用，包括README.md、项目结构说明.md等
- 更新工作流文件和脚本中的路径引用
- 更新文档索引文件中的路径引用

documentation/document_index.json

@@ -28305,7 +28305,7 @@
     "suggested_english_name": "core_theory_heaven_earth_logic_framework.md"
   },
   "64dcc5d173d7": {
-    "file_path": "tools/generate_ebook.py",
+    "file_path": "tools/content-generation/generate_ebook.py",
     "file_name": "generate_ebook.py",
     "file_size": 1555,
     "created_time": "2025-10-16T12:39:44.105708",
@@ -28316,7 +28316,7 @@
     "suggested_english_name": "other_generate_ebook.py"
   },
   "7ed28ec9c4dd": {
-    "file_path": "tools/generate_video.py",
+    "file_path": "tools/content-generation/generate_video.py",
     "file_name": "generate_video.py",
     "file_size": 3547,
     "created_time": "2025-10-16T12:37:49.919604",
@@ -28327,7 +28327,7 @@
     "suggested_english_name": "other_generate_video.py"
   },
   "631d2ababf2e": {
-    "file_path": "tools/generate_podcast.py",
+    "file_path": "tools/content-generation/generate_podcast.py",
     "file_name": "generate_podcast.py",
     "file_size": 2058,
     "created_time": "2025-10-16T12:37:08.998739",
@@ -28349,7 +28349,7 @@
     "suggested_english_name": "other_doc_indexer.py"
   },
   "4da4c015eab4": {
-    "file_path": "tools/image-processing/image_converter.py",
+    "file_path": "tools/data-processing/image-processing/image_converter.py",
     "file_name": "image_converter.py",
     "file_size": 8594,
     "created_time": "2025-10-16T12:05:12.555277",
@@ -28360,7 +28360,7 @@
     "suggested_english_name": "other_image_converter.py"
   },
   "ef214e4f4f41": {
-    "file_path": "tools/image-processing/quick_convert.py",
+    "file_path": "tools/data-processing/image-processing/quick_convert.py",
     "file_name": "quick_convert.py",
     "file_size": 3044,
     "created_time": "2025-10-16T12:05:12.555277",
@@ -28371,7 +28371,7 @@
     "suggested_english_name": "other_quick_convert.py"
   },
   "fde1497fcacc": {
-    "file_path": "tools/image-processing/deepzoom_generator.py",
+    "file_path": "tools/data-processing/image-processing/deepzoom_generator.py",
     "file_name": "deepzoom_generator.py",
     "file_size": 10509,
     "created_time": "2025-10-16T12:05:12.555277",
@@ -28382,7 +28382,7 @@
     "suggested_english_name": "other_deepzoom_generator.py"
   },
   "4eac6fe390e2": {
-    "file_path": "tools/image-processing/analyze_large_image.py",
+    "file_path": "tools/data-processing/image-processing/analyze_large_image.py",
     "file_name": "analyze_large_image.py",
     "file_size": 5323,
     "created_time": "2025-10-16T12:05:12.555277",

documentation/document_index_report.json

@@ -28323,7 +28323,7 @@
       "suggested_english_name": "core_theory_heaven_earth_logic_framework.md"
     },
     "64dcc5d173d7": {
-      "file_path": "tools/generate_ebook.py",
+      "file_path": "tools/content-generation/generate_ebook.py",
       "file_name": "generate_ebook.py",
       "file_size": 1555,
       "created_time": "2025-10-16T12:39:44.105708",
@@ -28334,7 +28334,7 @@
       "suggested_english_name": "other_generate_ebook.py"
     },
     "7ed28ec9c4dd": {
-      "file_path": "tools/generate_video.py",
+      "file_path": "tools/content-generation/generate_video.py",
       "file_name": "generate_video.py",
       "file_size": 3547,
       "created_time": "2025-10-16T12:37:49.919604",
@@ -28345,7 +28345,7 @@
       "suggested_english_name": "other_generate_video.py"
     },
     "631d2ababf2e": {
-      "file_path": "tools/generate_podcast.py",
+      "file_path": "tools/content-generation/generate_podcast.py",
       "file_name": "generate_podcast.py",
       "file_size": 2058,
       "created_time": "2025-10-16T12:37:08.998739",
@@ -28367,7 +28367,7 @@
       "suggested_english_name": "other_doc_indexer.py"
     },
     "4da4c015eab4": {
-      "file_path": "tools/image-processing/image_converter.py",
+      "file_path": "tools/data-processing/image-processing/image_converter.py",
       "file_name": "image_converter.py",
       "file_size": 8594,
       "created_time": "2025-10-16T12:05:12.555277",
@@ -28378,7 +28378,7 @@
       "suggested_english_name": "other_image_converter.py"
     },
     "ef214e4f4f41": {
-      "file_path": "tools/image-processing/quick_convert.py",
+      "file_path": "tools/data-processing/image-processing/quick_convert.py",
       "file_name": "quick_convert.py",
       "file_size": 3044,
       "created_time": "2025-10-16T12:05:12.555277",
@@ -28389,7 +28389,7 @@
       "suggested_english_name": "other_quick_convert.py"
     },
     "fde1497fcacc": {
-      "file_path": "tools/image-processing/deepzoom_generator.py",
+      "file_path": "tools/data-processing/image-processing/deepzoom_generator.py",
       "file_name": "deepzoom_generator.py",
       "file_size": 10509,
       "created_time": "2025-10-16T12:05:12.555277",
@@ -28400,7 +28400,7 @@
       "suggested_english_name": "other_deepzoom_generator.py"
     },
     "4eac6fe390e2": {
-      "file_path": "tools/image-processing/analyze_large_image.py",
+      "file_path": "tools/data-processing/image-processing/analyze_large_image.py",
       "file_name": "analyze_large_image.py",
       "file_size": 5323,
       "created_time": "2025-10-16T12:05:12.555277",

documentation/planning/PROJECT_STRUCTURE.md

@@ -43,13 +43,23 @@
 
 ## 技术工具 (tools/)
 ### 分析工具
-- `tools/image-processing/` - 图像处理工具
-- `tools/data-analysis/` - 数据分析脚本
-- `tools/ai-integration/` - AI工具集成
+- `tools/data-processing/image-processing/` - 图像处理工具
+- `tools/data-processing/` - 数据处理脚本
+- `tools/ai-tools/` - AI工具集成
+
+### 内容生成工具
+- `tools/content-generation/` - 电子书、播客和视频生成工具
+
+### 开发工具
+- `tools/development/` - 开发辅助工具
+- `tools/setup/` - 项目设置工具
 
 ### 可视化工具
 - `tools/diagrams/` - 图表和可视化
-- `tools/network-analysis/` - 网络分析工具
+- `tools/visualization/` - 数据可视化工具
+
+### 分析工具
+- `tools/analysis/` - 数据分析脚本
 
 ## 文档资料 (documentation/)
 ### 项目文档